Navigator for the evidence-appraisal cluster — the machinery for moving from a body of studies to a graded recommendation. Nucleus: Certainty of Evidence vs Strength of Recommendation.

Framing the question

  • Framing a Decision Question — the four mandatory slots (PICO); why the comparator is the slot that most changes the answer; why study design is not pre-specified; how broadly to define the population before pooling becomes misleading
  • Rating Outcome Importance — critical / important / limited; only critical outcomes drive the verdict; choose outcomes by importance, never by what was measured; whose perspective decides

Rating the evidence

  • Rating Certainty of Evidence — the four grades; outcome-centric rating; design as starting point not verdict; the five downgrade and three upgrade factors; why it is explicitly not a quantitative system
  • Indirectness of Evidence — the four sources of indirectness; the gate between “it worked there” and “it will work here”, priced as lost certainty
  • Upgrading Observational Evidence — the three narrow exits from the observational floor: large magnitude, dose-response gradient, residual confounding pointing the wrong way
  • Risk of Bias Assessment Tools — the study-level instruments GRADE’s RoB domain leaves unspecified: RoB 2 (5 domains, RCTs) and ROBINS-I (7 domains + target-trial + confounding-ceiling, observational); the RoB→certainty crosswalk; COI as a lens over the domains, not a domain
  • Synthesis Without Meta-Analysis — vote-counting by significance is unacceptable (power → 0 as studies accumulate); the direction-vs-significance line; the fallback ladder answers weaker questions
  • Surrogate Outcomes — when a marker may stand in for an outcome, and what it costs
  • Measurement Error in Dietary Assessment — how much error in self-reported diet can hide a real effect or manufacture a false one; the binding constraint on reading almost any observational nutrition finding
  • Energy Adjustment and What a Diet Coefficient Means — what a nutrient coefficient is actually comparing against; how the analytic model silently decides what the nutrient is substituted for

Turning evidence into a recommendation

Applied — a guideline read through this machinery

  • Saturated Fat Intake and Replacement — WHO 2023, the dietary-fat nucleus. Read here it yields three method findings as well as its recommendations: a conditional recommendation driven by certainty alone, a surrogate discounted at the strength step rather than the certainty step, and internally inconsistent certainty ratings under the guideline’s strongest replacement claim. RETRACTED at gate 1 (2026-07-26) — the ratings are per-design (Reynolds observational vs Hooper RCT), which is correct GRADE practice. See the page’s [REVIEW] marker.

Research-process integrity — why a published estimate is less trustworthy than its p-value

The mechanisms that discount a finding upstream of the appraisal grid — how the study was made, selected, and analysed (NASEM 2019). Appraisal machinery, not domain findings.

  • Reproducibility vs Replicability — one loose word, three distinct objects (same-data recompute / new-study redo / holds-elsewhere); the asymmetry (reproducibility expected, replicability not); and reproducible is not correct
  • Sources of Non-Replicability — the taxonomy: inherent/helpful variability vs avoidable defects (publication bias, p-hacking, incentives, errors, incomplete reporting; fraud rare); the aggregate “rate” is not a health grade
  • Publication Bias and Selective Reporting — the significance filter biases the literature not the study; effect-size inflation / winner’s curse (published originals over-estimate; replications shrink)
  • P-Hacking and Researcher Degrees of Freedom — analytic flexibility within one study (p-hacking, HARKing, multiplicity, garden of forking paths); the p-value does not invert; precision is not accuracy
  • Confidence in Science Without a Replication Crisis — NASEM’s measured stance: non-replication is expected, the aggregate rate unknowable, confidence comes from convergence of independent methods; the symmetric single-study caution

Checking someone else’s appraisal

  • What a Trustworthy Systematic Review Requires — the IOM 2011 bar (21 standards / 82 elements) an outside reader holds a finished SR to; the standard-vs-method distinction from Cochrane; the admissible class-5 process-defect instrument the wiki previously lacked; grades process, not truth (open loop)

  • Is This Actually a Systematic Review — the SR-vs-narrative-review test; the reproducible prespecified search is the diagnostic feature; flags held premises resting on a single narrative review (Petroski antinutrients, Astrup SFA, Valdes microbiome)

  • Was GRADE Actually Used — the seven suggested criteria for claiming GRADE; how to turn a suspicion of under-argued method into a specific, citable finding

  • Which Objective Moved This Recommendation — a recommendation is a composite of evidence and non-evidence objectives; the evidence-to-decision table is where a body says which one moved it

  • Is the Food Category Doing Any Work — when the exposure is a category, does the boundary carry information? Sometimes yes (SSB inside sugars), sometimes demonstrably not (refined vs whole grain)

  • Physical Activity Dose and Mortality — where the PA mortality curve bends: ~24 min/day MVPA reaches maximal risk reduction (HR 0.34, HIGH certainty, accelerometer-measured); strength adds independently but is never ranked above aerobic; sedentary time carries its own thresholds

  • Whole Grains Refined Grains and Pulses — refined grains show a flat null (RR 1.00) for CVD and T2D; whole-grain benefit is cohort-only and SACN attributes it to cereal fibre; pulses now have dedicated SR+MAs — cohort-null on CVD/T2D events + LDL benefit at RCT doses (Thorisdottir), and non-soy legumes -> ~6% lower all-cause mortality per 50 g/d but no robust cause-specific signal (Zargarzadeh)

  • Dietary Fibre and Health — the fibre nucleus (Reynolds 2019 outcomes + Brown 1999 LDL mechanism). Big mortality/T2D numbers are observational (RR ~0.85); the RCT-grade effect is small and on a surrogate (soluble fibre -> LDL -0.057 mmol/L per g). Isolate out-grades the food by design; dose-response is outcome-specific (linear-no-plateau on outcomes, attenuating on LDL)

  • Glycaemic Index and Glycaemic Load and Chronic Disease — Jenkins 2024 mega-cohort MA: high GI tracks T2D (RR 1.27), CVD (1.15), mortality (1.08), cancer (1.05), mostly GRADE-low; associations «similar» to fibre/whole grain in the same cohorts. The wiki reads that similarity as collinearity (GI is a proxy, only 17% adjusted for fibre), not proof of an independent lever. Deeply-conflicted author (GI’s inventor, rebutting WHO’s dismissal); confidence: low

  • Gut Microbiome and Health — the microbiome nucleus (Valdes 2018 BMJ + WGO 2023 guideline + Suez). Composition-shift is a surrogate; causation is the central confound; diet/fibre is the big lever (prebiotics ≈ fibre); probiotics are strain-and-indication-specific (NEC NNT 20, AAD, C. diff prevention, some IBS), not a general tonic; FMT is routine only for recurrent C. difficile